PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_13691_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 203aa    MW: 22709.4 Da    PI: 8.3851
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_13691_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.33.8e-18754253
                                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkl 53
                                         +++GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ +
  cra_locus_13691_iso_1_len_996_ver_3  7 RFRGVRQRH-WGSWVSEIRHP-----IlkTRIWLGTFETAEDAARAYDEAARLM 54
                                         69******9.**********8.....556*********************9865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.78E-35666No hitNo description
SMARTSM003805.8E-40770IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.6E-33764IPR001471AP2/ERF domain
PROSITE profilePS5103220.666764IPR001471AP2/ERF domain
PfamPF008474.8E-11754IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-20766IPR016177DNA-binding domain
PRINTSPR003671.1E-10819IPR001471AP2/ERF domain
PRINTSPR003671.1E-103046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MARPQQRFRG VRQRHWGSWV SEIRHPILKT RIWLGTFETA EDAARAYDEA ARLMCGVRAR  60
TNFPYNPNSP PNTCSSKHLS ATLTAKLHKC YLTSLHHHHQ ISSSSSTTIN NTKHQHQIAA  120
AGSAITAANN HNHEAQENKP TMVVGHGQEQ IKTLEDDHIE QMIQELLHYG SIELCSVPTP  180
TFAIPPPPPH FSIDTHSLPP NSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-18664160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00526DAPTransfer from AT5G25190Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016462558.16e-75PREDICTED: ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW51e-74ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLD5L1052e-74D5L105_MALDO; AP2 domain class transcription factor
STRINGBra020490.1-P1e-72(Brassica rapa)